Why Acid Reflux Isn’t Always Too Much Acid: A Functional Medicine Approach

Acid reflux or heartburn is often seen as a minor inconvenience—an annoying burning sensation after eating spicy food or lying down too soon after a meal. Conventional medicine commonly attributes acid reflux to excessive stomach acid and treats it with acid-blocking medications like proton pump inhibitors (PPIs). However, what if the problem isn’t too much acid but too little?

Functional medicine takes a different approach to acid reflux by addressing the root causes instead of merely suppressing symptoms. If you’re struggling with chronic acid reflux, it’s time to dig deeper and understand what’s truly happening in your digestive system.

Understanding Acid Reflux: More Than Just Heartburn

Acid reflux occurs when stomach acid flows up into the esophagus, causing irritation and discomfort. While conventional medicine blames excess stomach acid, research and clinical experience show that low stomach acid (hypochlorhydria) more commonly triggers the burning sensation.

How does it work? Your stomach needs a strong acidic environment to digest food properly. When stomach acid is too low, food sits in the stomach longer than it should, leading to pressure buildup. This pressure can force acid upward into the esophagus, mimicking the symptoms of high stomach acid. Taking acid blockers may temporarily relieve discomfort, but they can make the problem worse by further decreasing stomach acid production.

The Dangers of Long-Term Acid Blockers

PPIs and other acid blockers may provide short-term relief, but they come with long-term risks. Studies show that prolonged PPI use can lead to nutrient deficiencies (such as B12, magnesium, and calcium), increased risk of infections (like H. pylori and C. difficile), bone fractures due to poor calcium absorption and even cancer. Instead of covering up symptoms, it’s crucial to restore balance in the digestive system.

Common Causes of Acid Reflux

  1. Low Stomach Acid (Hypochlorhydria) – Inadequate acid production leads to poor digestion, bacterial overgrowth, and reflux-like symptoms.
  2. Poor Diet Choices – Processed foods, excessive caffeine, alcohol, and inflammatory foods can disrupt digestion.
  3. Gut Microbiome Imbalances – Overgrowth of harmful bacteria (SIBO), H. pylori infections, and dysbiosis can contribute to reflux.
  4. Stress & the Gut-Brain Connection – Chronic stress weakens digestion by reducing stomach acid production.
  5. Obesity & Poor Posture – Extra abdominal weight increases stomach pressure, while poor posture after meals can force acid up.
  6. Food Sensitivities – Many people with chronic reflux react to common irritants like gluten, dairy, and processed oils without realizing it.
  7. Hormonal Imbalances – Low progesterone, common in women during menopause or pregnancy, can weaken the esophageal sphincter, increasing reflux risk.

A Functional Medicine Approach to Healing Acid Reflux

Instead of masking symptoms with medication, functional medicine focuses on restoring balance to the digestive system. Here’s how:

1. Restore Stomach Acid Balance

  • Apple Cider Vinegar (ACV) – Taking a teaspoon diluted in water before meals can help increase acidity.
  • Digestive Bitters – These stimulate natural acid and enzyme production.
  • Betaine HCl Supplements – Used under professional guidance, these can support stomach acid levels.
  • Avoid Overhydrating During Meals – Drinking too much liquid while eating can dilute stomach acid, making digestion less efficient.

2. Heal the Gut Lining

  • Aloe Vera Juice – Soothes and reduces inflammation in the esophagus.
  • Licorice Root (DGL) – Supports the stomach lining without reducing acid.
  • Bone Broth – Contains amino acids that repair gut damage.
  • L-Glutamine – An amino acid that helps restore the integrity of the gut lining.

3. Eliminate Trigger Foods

Removing inflammatory foods that weaken digestion can significantly improve symptoms:

  • Avoid Gluten, Dairy & Corn – These can irritate the gut lining and contribute to inflammation.
  • Reduce Processed Foods & Caffeine – These disrupt digestion and cause acid imbalance.
  • Eat Smaller Meals – Overeating increases stomach pressure and reflux symptoms.
  • Try an Elimination Diet – Removing common irritants for 30 days and reintroducing them gradually can help pinpoint problem foods.

4. Balance Gut Bacteria

  • Probiotics & Prebiotics – These restore good bacteria and improve digestion.
  • Treat SIBO & H. Pylori – Testing and treatment for bacterial imbalances can reduce reflux.
  • Increase Fiber Intake – Prebiotic-rich foods like onions, garlic, and asparagus feed beneficial gut bacteria.
  • Avoid Overuse of Antibiotics – Antibiotics can wipe out beneficial bacteria, leading to gut imbalances.

5. Manage Stress & Support Digestion

  • Deep Breathing & Meditation – Helps reduce stress-induced digestive issues.
  • Light Movement After Meals – Walking aids digestion and prevents reflux.
  • Prioritize Sleep – Poor sleep worsens digestion and increases inflammation.
  • Eat Mindfully – Chewing food thoroughly and eating slowly improves digestion.

A Sample Acid-Reflux Healing Meal Plan

To help support digestion and reduce reflux, here’s a sample 1-day meal plan using functional medicine principles:

Breakfast: Scrambled eggs with sautéed spinach and avocado

Lunch:  Steak and roasted vegetables 

Snack: Bone broth with turmeric and ginger 

Dinner:  Grass-fed beef stir-fry with steamed broccoli and coconut aminos

When to Seek Professional Help

If acid reflux is frequent, severe, or linked to other symptoms like difficulty swallowing, unexplained weight loss, or persistent coughing, it’s time to seek out a functional medicine practitioner. Functional medicine testing, such as comprehensive stool tests, H. pylori testing, and stomach acid assessments, can uncover deeper digestive imbalances that need to be addressed.

Conclusion: Fix Acid Reflux for Good

Acid reflux is more than just an inconvenience—it’s a signal that your digestive system needs support. Rather than relying on acid-blocking medications, a functional medicine approach focuses on restoring stomach acid balance, improving gut health, eliminating trigger foods, and managing stress.

If you’re tired of dealing with acid reflux and want lasting relief, it’s time to take action. Book a Discovery Call with Twin Oaks Health today to create a personalized plan and start your journey toward better digestion and overall wellness.

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